PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G087600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 486aa    MW: 54488.1 Da    PI: 7.5413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G087600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11310356455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Prupe.5G087600.1.p 310 NHVEAERQRREKLNHRFYLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 356
                         799***********************6.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-3722212IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.46E-13304360No hitNo description
SuperFamilySSF474594.06E-16304369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-15310368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9310355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEAIISSCSS PNFCQENLGT FQQRLQFIFQ NRPEWWLYWI FWQSSKDSND QVSLSWAAGD  60
FRVNSDLASK RNNKVSNNHQ PKFGFNKKVT SREAEEALFD EDMADLEMRL VDHEDVTESE  120
WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGAHE LQFYECERVK EARMHGIQTL  180
VCIATPCGVL ELASLDVIKE DWGFVHLSKS LFGSDNNNNN NRVSQQKGSR EGNVLAPLLA  240
NGIFSGSQKE LTRQAAGTKE AAPFNIGGSS PESLSGSVGN FTCENTGNTR SKKRRRSSNN  300
GASRESSLLN HVEAERQRRE KLNHRFYLLR SVVPNVSKMD RSSLLADAVA YINQLKAKVE  360
ELELKTQAQP QNPKKVSVNN LDNQCSQSTS SIVDHHSSYN NTKVVPVEVD VKIMGSEAII  420
RVQCQDQDYP YARLMNALKG LGLQVYHASI SSVKELMIQD VVARVPYGFT SEEAMRTGII  480
KRWHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-22112122192Transcription factor MYC3
4rqw_B2e-22112122192Transcription factor MYC3
4rs9_A2e-22112122192Transcription factor MYC3
4yz6_A2e-22112122192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238754.10.0PREDICTED: transcription factor MYC4-like isoform X1
TrEMBLM5WX790.0M5WX79_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11400.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.19e-60bHLH family protein